Wipapat Kladwang: search on Z-Library

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1

A two-dimensional mutate-and-map strategy for non-coding RNA structure

Kladwang, Wipapat, VanLang, Christopher C., Cordero, Pablo, Das, Rhiju

Journal:

Nature Chemistry

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

2

A Mutate-and-Map Strategy for Inferring Base Pairs in Structured Nucleic Acids: Proof of Concept on a DNA/RNA Helix

Kladwang, Wipapat, Das, Rhiju

Journal:

Year:

2010

Language:

english

File:

PDF, 1.69 MB

english, 2010

3

RNA regulons in Hox 5′ UTRs confer ribosome specificity to gene regulation

Xue, Shifeng, Tian, Siqi, Fujii, Kotaro, Kladwang, Wipapat, Das, Rhiju, Barna, Maria

Journal:

Year:

2014

Language:

english

File:

PDF, 5.05 MB

english, 2014

4

Hypersaline stress induces the turnover of phosphatidylcholine and results in the synthesis of the renal osmoprotectant glycerophosphocholine in Saccharomyces cerevisiae

Annette Kiewietdejonge, Matthew Pitts, Lee Cabuhat, Claire Sherman, Wipapat Kladwang, Gena Miramontes, Jorge Floresvillar, Jeffrey Chan, Robert M. Ramirez

Journal:

FEMS Yeast Research

Year:

2006

Language:

english

File:

PDF, 170 KB

english, 2006

5

Automated RNA Structure Prediction Uncovers a Kink-Turn Linker in Double Glycine Riboswitches

Kladwang, Wipapat, Chou, Fang-Chieh, Das, Rhiju

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 3.62 MB

english, 2012

6

Standardization of RNA Chemical Mapping Experiments

Kladwang, Wipapat, Mann, Thomas H., Becka, Alex, Tian, Siqi, Kim, Hanjoo, Yoon, Sungroh, Das, Rhiju

Journal:

Year:

2014

Language:

english

File:

PDF, 803 KB

english, 2014

7

Understanding the Errors of SHAPE-Directed RNA Structure Modeling

Kladwang, Wipapat, VanLang, Christopher C., Cordero, Pablo, Das, Rhiju

Journal:

Year:

2011

Language:

english

File:

PDF, 2.62 MB

english, 2011

8

Quantitative Dimethyl Sulfate Mapping for Automated RNA Secondary Structure Inference

Cordero, Pablo, Kladwang, Wipapat, VanLang, Christopher C., Das, Rhiju

Journal:

Year:

2012

Language:

english

File:

PDF, 779 KB

english, 2012

9

High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states

Tian, Siqi, Cordero, Pablo, Kladwang, Wipapat, Das, Rhiju

Journal:

Year:

2014

Language:

english

File:

PDF, 897 KB

english, 2014

10

Ultraviolet Shadowing of RNA Can Cause Significant Chemical Damage in Seconds

Kladwang, Wipapat, Hum, Justine, Das, Rhiju

Journal:

Scientific Reports

Year:

2012

Language:

english

File:

PDF, 685 KB

english, 2012

11

Antiplasmodial Compounds from the Wood-Decayed Fungus Xylaria sp. BCC 1067

Isaka*, Masahiko, Jaturapat, Amonlaya, Kladwang, Wipapat, Punya, Juntira, Lertwerawat, Yuwapin, Tanticharoen, Morakot, Thebtaranonth, Yodhathai

Journal:

Year:

2000

Language:

english

File:

PDF, 75 KB

english, 2000

12

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling

Parin Sripakdeevong, Wipapat Kladwang and Rhiju Das

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.55 MB

english, 2011

13

Blind tests of RNA nearest-neighbor energy prediction

Chou, Fang-Chieh, Kladwang, Wipapat, Kappel, Kalli, Das, Rhiju

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

14

RNA structure inference through chemical mapping after accidental or intentional mutations

Cheng, Clarence Y., Kladwang, Wipapat, Yesselman, Joseph D., Das, Rhiju

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

15

Blind prediction of noncanonical RNA structure at atomic accuracy

Watkins, Andrew M., Geniesse, Caleb, Kladwang, Wipapat, Zakrevsky, Paul, Jaeger, Luc, Das, Rhiju

Journal:

Science Advances

Year:

2018

Language:

english

File:

PDF, 6.87 MB

english, 2018

16

Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping

Tian, Siqi, Kladwang, Wipapat, Das, Rhiju

Journal:

Year:

2018

Language:

english

File:

PDF, 6.11 MB

english, 2018

17

Automated design of diverse stand-alone riboswitches

Wu, Michelle Jennifer, Andreasson, Johan OL, Kladwang, Wipapat, Greenleaf, William J, Das, Rhiju

Journal:

ACS Synthetic Biology

Year:

2019

Language:

english

File:

PDF, 1.33 MB

english, 2019

18

Computational design of three-dimensional RNA structure and function

Yesselman, Joseph D., Eiler, Daniel, Carlson, Erik D., Gotrik, Michael R., d’Aquino, Anne E., Ooms, Alexandra N., Kladwang, Wipapat, Carlson, Paul D., Shi, Xuesong, Costantino, David A., Herschlag, Da

Journal:

Nature Nanotechnology

Year:

2019

File:

PDF, 3.08 MB

2019

19

Anomalous reverse transcription through chemical modifications in polyadenosine stretches

Kladwang, Wipapat, Topkar, Ved, Liu, Bei, Rangan, Ramya, Hodges, Tracy, Keane, Sarah, Al-Hashimi, Hashim M., Das, Rhiju

Journal:

Year:

2020

File:

PDF, 2.47 MB

2020

20

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

Kappel, Kalli, Zhang, Kaiming, Su, Zhaoming, Watkins, Andrew M., Kladwang, Wipapat, Li, Shanshan, Pintilie, Grigore, Topkar, Ved V., Rangan, Ramya, Zheludev, Ivan N., Yesselman, Joseph D., Chiu, Wah,

Journal:

Year:

2020

File:

PDF, 11.87 MB

2020